國家衛生健康委員會等5部門聯合制定
| 序號 | 中文名稱 | 英文名稱 |
| 1 | 21-羥化酶缺乏症 | 21-Hydroxyulase Deficiency |
| 2 | 白化病 | Albinism |
| 3 | 奧爾波特綜合徵 | Alport Syndrome |
| 4 | 肌萎縮側索硬化 | Amyotrophic Lateral Sclerosis |
| 5 | 安格曼症候群(天使綜合徵) | Angelman Syndrome |
| 6 | 精氨酸酶缺乏症 | Arginase Deficiency |
| 7 | 熱納綜合徵(窒息性胸腔失養症) | Asphyxiating Thoracic Dystrophy(Jeune Syndrome) |
| 8 | 非典型溶血性尿毒癥 | Atypical Hemolytic Uremic Syndrome |
| 9 | 自身免疫性腦炎 | Autoimmune Encephalitis |
| 10 | 自身免疫性垂體炎 | Autoimmune Hypophysitis |
| 11 | 自身免疫性胰島素受體病 | Autoimmune Insulin Receptopathy(Type B insulin resistance) |
| 12 | β-酮硫解酶缺乏症 | Beta-ketothiolase Deficiency |
| 13 | 生物素酶缺乏症 | Biotinidase Deficiency |
| 14 | 心臟離子通道病 | Cardic Ion Channelopathies |
| 15 | 原發性肉堿缺乏症 | Carnitine Deficiency |
| 16 | 卡斯爾曼氏病 | Castleman Disease |
| 17 | 腓骨肌萎縮症 | Charcot-Marie-Tooth Disease |
| 18 | 瓜氨酸血症 | Citrullinemia |
| 19 | 先天性腎上腺發育不良 | Congenital Adrenal Hypoplasia |
| 20 | 先天性高胰島素性低血糖血症 | Congenital Hyperinsulinemic Hypoglycemia |
| 21 | 先天性肌無力綜合徵 | Congenital Myasthenic Syndrome |
| 22 | 先天性肌強直(非營養不良性肌強直綜合徵) | Congenital Myotonia Syndrome(Non-Dystrophic Myotonia, NDM) |
| 23 | 先天性脊柱側彎 | Congenital Scoliosis |
| 24 | 冠狀動脈擴張病 | Coronary Artery Ectasia |
| 25 | 先天性純紅細胞再生障礙性貧血 | Diamond-Blackfan Anemia |
| 26 | 脂質肉芽腫病 | Erdheim-Chester Disease |
| 27 | 法佈雷病 | Fabry Disease |
| 28 | 家族性地中海熱 | Familial Mediterranean Fever |
| 29 | 範可尼貧血 | Fanconi Anemia |
| 30 | 半乳糖血症 | Galactosemia |
| 31 | 戈謝病 | Gaucher’s Disease |
| 32 | 全身型重症肌無力 | General Myathenic Gravis |
| 33 | 吉特曼氏綜合徵 | Gitelman Syndrome |
| 34 | 戊二酸血症I型 | Glutaric Acidemia Type I |
| 35 | 糖原累積病(I型、Ⅱ型) | Glycogen Storage Disease(Type I、II) |
| 36 | 血友病 | Hemophilia |
| 37 | 肝豆狀核變性 | Hepatolenticular Degeneration(Wilson Disease) |
| 38 | 遺傳性血管性水腫 | Hereditary Angioedema (HAE) |
| 39 | 遺傳性大皰性表皮鬆解症 | Hereditary Epidermolysis Bullosa |
| 40 | 遺傳性果糖不耐受症 | Hereditary Fructose Intolerance |
| 41 | 遺傳性低鎂血症 | Hereditary Hypomagnesemia |
| 42 | 遺傳性多發腦梗死性癡呆 | Hereditary Multi-infarct Dementia(Cerebral Autosomal Dominant Arteriopathy with Subcortical Infarcts and Leukoencephalopathy, CADASIL) |
| 43 | 遺傳性痙攣性截癱 | Hereditary Spastic Paraplegia |
| 44 | 全羧化酶合成酶缺乏症 | Holocarboxylase Synthetase Deficiency |
| 45 | 同型半胱氨酸血症 | Homocysteinemia |
| 46 | 純合子家族性高膽固醇血症 | Homozygous Hypercholesterolemia |
| 47 | 亨廷頓舞蹈病 | Huntington Disease |
| 48 | 高鳥氨酸血症-高氨血症-同型瓜氨酸尿綜合徵 | Hyperornithinaemia-Hyperammonaemia-Hhomocitrullinuria Syndrome |
| 49 | 高苯丙氨酸血症 | Hyperphenylalaninemia |
| 50 | 低鹼性磷酸酶血症 | Hypophosphatasia |
| 51 | 低磷性佝僂病 | Hypophosphatemic Rickets |
| 52 | 特發性心肌病 | Idiopathic Cardiomyopathy |
| 53 | 特發性低促性腺激素性性腺功能減退症 | Idiopathic Hypogonadotropic Hypogonadism |
| 54 | 特發性肺動脈高壓 | Idiopathic Pulmonary Arterial Hypertension |
| 55 | 特發性肺纖維化 | Idiopathic Pulmonary Fibrosis |
| 56 | IgG4相關性疾病 | IgG4 related Disease |
| 57 | 先天性膽汁酸合成障礙 | Inborn Errors of Bile Acid Synthesis |
| 58 | 異戊酸血症 | Isovaleric Acidemia |
| 59 | 卡爾曼綜合徵 | Kallmann Syndrome |
| 60 | 朗格漢斯組織細胞增生症 | Langerhans Cell Histiocytosis |
| 61 | 萊倫氏綜合徵 | Laron Syndrome |
| 62 | 萊伯遺傳性視神經病變 | Leber Hereditary Optic Neuropathy |
| 63 | 長鏈3-羥醯基輔酶A脫氫酶缺乏症 | Long Chain 3-hydroxy acyl-CoA Dehydrogenase Deficiency |
| 64 | 淋巴管肌瘤病 | Lymphangioleiomyomatosis (LAM) |
| 65 | 賴氨酸尿蛋白不耐受症 | Lysine Urinary Protein Intolerance |
| 66 | 溶酶體酸性脂肪酶缺乏症 | Lysosomal Acid Lipase Deficiency |
| 67 | 楓糖尿症 | Maple Syrup Urine Disease |
| 68 | 馬凡綜合徵 | Marfan Syndrome |
| 69 | 麥庫恩-奧爾布賴特綜合徵 | McCune-Albright Syndrome |
| 70 | 中鏈醯基輔酶A脫氫酶缺乏症 | Medium Chain Acyl-CoA Dehydrogenase Deficiency |
| 71 | 甲基丙二酸血症 | Methylmalonic Academia |
| 72 | 線粒體腦肌病 | Mitochondrial Encephalomyopathy |
| 73 | 黏多糖貯積症 | Mucopolysaccharidosis |
| 74 | 多灶性運動神經病 | Multi-Focal Motor Neuropathy |
| 75 | 多種醯基輔酶A脫氫酶缺乏症 | Multiple Acyl-CoA Dehydrogenase Deficiency |
| 76 | 多發性硬化 | Multiple Sclerosis |
| 77 | 多系統萎縮 | Multiple System Atrophy |
| 78 | 肌強直性營養不良 | Myotonic Dystrophy |
| 79 | N-乙醯谷氨酸合成酶缺乏症 | NAGS Deficiency |
| 80 | 新生兒糖尿病 | Neonatal Diabetes Mellitus |
| 81 | 視神經脊髓炎 | Neuromyelitis Optica |
| 82 | 尼曼匹克病 | Niemann-Pick Disease |
| 83 | 非綜合徵性耳聾 | Non-Syndromic Deafness |
| 84 | 努南綜合徵 | Noonan Syndrome |
| 85 | 鳥氨酸氨甲醯基轉移酶缺乏症 | Ornithine Transcarbamylase Deficiency |
| 86 | 成骨不全症(脆骨病) | Osteogenesis Imperfecta(Brittle Bone Disease) |
| 87 | 帕金森病(青年型、早發型) | Parkinson Disease (Young-onset, Early-onset) |
| 88 | 陣發性睡眠性血紅蛋白尿 | Paroxysmal Nocturnal Hemoglobinuria |
| 89 | 黑斑息肉綜合徵 | Peutz-Jeghers Syndrome |
| 90 | 苯丙酮尿症 | Phenylketonuria |
| 91 | POEMS綜合徵 | POEMS Syndrome |
| 92 | 卟啉病 | Porphyria |
| 93 | 普瑞德-威利綜合徵 | Prader-Willi Syndrome |
| 94 | 原發性聯合免疫缺陷 | Primary Combined Immune Deficiency |
| 95 | 原發性遺傳性肌張力不全 | Primary Hereditary Dystonia |
| 96 | 原發性輕鏈型澱粉樣變 | Primary Light Chain Amyloidosis |
| 97 | 進行性家族性肝內膽汁淤積症 | Progressive Familial Intrahepatic Cholestasis |
| 98 | 進行性肌營養不良 | Progressive Muscular Dystrophies |
| 99 | 丙酸血症 | Propionic Acidemia |
| 100 | 肺泡蛋白沉積症 | Pulmonary Alveolar Proteinosis |
| 101 | 肺囊性纖維化 | Pulmonary Cystic Fibrosis |
| 102 | 視網膜色素變性症 | Retinitis Pigmentosa |
| 103 | 視網膜母細胞瘤 | Retinoblastoma |
| 104 | 重症先天性粒細胞缺乏症 | Severe Congenital Neutropenia |
| 105 | 嬰兒嚴重肌陣攣性癲癇(卓飛綜合征) | Severe Myoclonic Epilepsy In Infaricy(Dravet Syndrome) |
| 106 | 鐮刀型細胞貧血病 | Sickle Cell Disease |
| 107 | 不對稱性侏儒綜合徵 | Silver-Russell Syndrome |
| 108 | 穀固醇血症 | Sitosterolemia |
| 109 | 脊髓延髓肌萎縮症(甘迺迪病) | Spinal and Bulbar Muscular Atrophy(Kennedy Disease) |
| 110 | 脊髓性肌萎縮症 | Spinal Muscular Atrophy |
| 111 | 脊髓小腦性共濟失調 | Spinocerebellar Ataxia |
| 112 | 系統性硬化症 | Systemic Sclerosis |
| 113 | 四氫生物蝶呤缺乏症 | Tetrahydrobiopterin Deficiency |
| 114 | 結節性硬化症 | Tuberous Sclerosis Complex |
| 115 | 原發性酪氨酸血症 | Tyrosinemia |
| 116 | 極長鏈醯基輔酶A脫氫酶缺乏症 | Very Long Chain Acyl-CoA Dehydrogenase Deficiency |
| 117 | 威廉姆斯綜合徵 | Williams Syndrome |
| 118 | 濕疹血小板減少伴免疫缺陷綜合徵 | Wiskott-Aldrich Syndrome |
| 119 | X-連鎖無丙種球蛋白血症 | X-linked Agammaglobulinemia |
| 120 | X-連鎖腎上腺腦白質營養不良 | X-linked Ldrenoleuko Dystrophy |
| 121 | X-連鎖淋巴增生症 | X-linked Lymphoproliferative Disease |





